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Author Title [ Type(Desc)] Year
Journal Article
J. Y. Lee and Lyman, E., Agonist Dynamics and Conformational Selection during Microsecond Simulations of the A2A Adenosine Receptor, Biophysical journal, vol. 102, pp. 2114-2120, 2012.
E. Lyman and Zuckerman, D. M., Annealed importance sampling of peptides, J. Chem. Phys., vol. 127, pp. 065101-6, 2007.
G. A. Ayton, Lyman, E., and Voth, G. A., Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales, Faraday Discuss., vol. 144, pp. 347-357, 2010.
H. Cui, Lyman, E., and Voth, G. A., Mechanism of Membrane Curvature Sensing by Amphipathic Helix Containing Proteins, Biophys. J., vol. 100, pp. 1271-1279, 2011.
C. - L. Lai, Jao, C. C., Lyman, E., Gallop, J. L., Peter, B. J., McMahon, H. T., Langen, R., and Voth, G. A., Membrane Binding and Self-Association of the Epsin N-Terminal Homology Domain, Journal of Molecular Biology, vol. 423, pp. 800-817, 2012.
G. S. Ayton, Lyman, E., Krishna, V., Swenson, R. D., Mim, C., Unger, V. M., and Voth, G. A., New Insights into BAR Domain-Induced Membrane Remodeling, vol. 97, pp. 1616-1625, 2009.
A. J. Sodt, Venable, R. M., Lyman, E., and Pastor, R. W., Nonadditive Compositional Curvature Energetics of Lipid Bilayers, Phys. Rev. Lett., vol. 117, p. 138104, 2016.
E. Lyman and Schmittmann, B., Phase diagram of a driven interacting three-state lattice gas, Journal of Physics A: Mathematical and General, vol. 35, p. L213, 2002.
J. Y. Lee and Lyman, E., Predictions for Cholesterol Interaction Sites on the A2A Adenosine Receptor, J. Am. Chem. Soc., vol. 134, pp. 16512-16515, 2012.
P. Liu, Shi, Q., Lyman, E., and Voth, G. A., Reconstructing atomistic detail for coarse-grained models with resolution exchange, J. Chem. Phys., vol. 129, pp. 114103-8, 2008.
E. Lyman, Cui, H., and Voth, G. A., Reconstructing protein remodeled membranes in molecular detail from mesoscopic models, Physical Chemistry Chemical Physics, vol. 13, pp. 10430-10436, 2011.
E. Lyman and Zuckerman, D. M., Resampling improves the efficiency of a ``fast-switch'' equilibrium sampling protocol, The Journal of Chemical Physics, vol. 130, pp. 081102-3, 2009.
E. Lyman, Ytreberg, M. F., and Zuckerman, D. M., Resolution exchange simulation, Phys. Rev. Lett., vol. 96, p. 028105, 2006.
E. Lyman and Zuckerman, D. M., Resolution exchange simulation with incremental coarsening, J. Chem. Theory Comput., vol. 2, pp. 656-666, 2006.
E. Lyman, Retinal Flips the Script., Biophysical journal, vol. 108, no. 12, p. 2754, 2015.
E. Lyman, Higgs, C., Kim, B., Lupyan, D., Shelley, J. C., Farid, R., and Voth, G. A., A role for a specific cholesterol interaction in stabilizing the inactive, apo configuration of the human A2A adenosine receptor, Structure, vol. 17, pp. 1660-1668, 2009.
D. M. Zuckerman and Lyman, E., A second look at canonical sampling of biomolecules using replica exchange simulation, J. Chem. Theory Comput., vol. 2, pp. 1200-1202, 2006.
E. Lyman and Schmittmann, B., Steady states of a nonequilibrium lattice gas, Physical Review E, vol. 72, p. 036127, 2005.
C. Mim, Cui, H., Gawronski-Salerno, J. A., Frost, A., Lyman, E., Voth, G. A., and Unger, V. M., Structural Basis of Membrane Bending by the N-BAR Protein Endophilin, Cell, vol. 149, pp. 137-145, 2012.
E. Lyman and Zuckerman, D. M., On the Structural Convergence of Biomolecular Simulations by Determination of the Effective Sample Size, The Journal of Physical Chemistry B, vol. 111, pp. 12876-12882, 2007.
J. Pfaendtner, Lyman, E., Pollard, T. D., and Voth, G. A., Structure and Dynamics of the Actin Filament, Journal of Molecular Biology, vol. 396, pp. 252-263, 2009.
E. Lyman, Pfaendtner, J., and Voth, G. A., Systematic Multiscale Parameterization of Heterogeneous Elastic Network Models of Proteins, vol. 95, pp. 4183-4192, 2008.
H. Cui, Mim, C., Vazquez, F. X., Lyman, E., Unger, V. M., and Voth, G. A., Understanding the Role of Amphipathic Helices in N-BAR Domain Driven Membrane Remodeling, Biophysical journal, vol. 104, pp. 404-411, 2013.
E. Lyman, Cui, H., and Voth, G. A., Water under the BAR, Biophys. J., vol. 99, pp. 1783-1790, 2010.