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C. - L. Lai, Jao, C. C., Lyman, E., Gallop, J. L., Peter, B. J., McMahon, H. T., Langen, R., and Voth, G. A., Membrane Binding and Self-Association of the Epsin N-Terminal Homology Domain, Journal of Molecular Biology, vol. 423, pp. 800-817, 2012.
J. Y. Lee and Lyman, E., Predictions for Cholesterol Interaction Sites on the A2A Adenosine Receptor, J. Am. Chem. Soc., vol. 134, pp. 16512-16515, 2012.
J. Y. Lee and Lyman, E., Agonist Dynamics and Conformational Selection during Microsecond Simulations of the A2A Adenosine Receptor, Biophysical journal, vol. 102, pp. 2114-2120, 2012.
P. Liu, Shi, Q., Lyman, E., and Voth, G. A., Reconstructing atomistic detail for coarse-grained models with resolution exchange, J. Chem. Phys., vol. 129, pp. 114103-8, 2008.
E. Lyman and Schmittmann, B., Steady states of a nonequilibrium lattice gas, Physical Review E, vol. 72, p. 036127, 2005.
E. Lyman, Retinal Flips the Script., Biophysical journal, vol. 108, no. 12, p. 2754, 2015.
E. Lyman and Zuckerman, D. M., Resampling improves the efficiency of a ``fast-switch'' equilibrium sampling protocol, The Journal of Chemical Physics, vol. 130, pp. 081102-3, 2009.
E. Lyman and Schmittmann, B., Phase diagram of a driven interacting three-state lattice gas, Journal of Physics A: Mathematical and General, vol. 35, p. L213, 2002.
E. Lyman, Cui, H., and Voth, G. A., Reconstructing protein remodeled membranes in molecular detail from mesoscopic models, Physical Chemistry Chemical Physics, vol. 13, pp. 10430-10436, 2011.
E. Lyman and Zuckerman, D. M., On the Structural Convergence of Biomolecular Simulations by Determination of the Effective Sample Size, The Journal of Physical Chemistry B, vol. 111, pp. 12876-12882, 2007.
E. Lyman, Pfaendtner, J., and Voth, G. A., Systematic Multiscale Parameterization of Heterogeneous Elastic Network Models of Proteins, vol. 95, pp. 4183-4192, 2008.
E. Lyman and Zuckerman, D. M., Annealed importance sampling of peptides, J. Chem. Phys., vol. 127, pp. 065101-6, 2007.
E. Lyman, Higgs, C., Kim, B., Lupyan, D., Shelley, J. C., Farid, R., and Voth, G. A., A role for a specific cholesterol interaction in stabilizing the inactive, apo configuration of the human A2A adenosine receptor, Structure, vol. 17, pp. 1660-1668, 2009.
E. Lyman and Zuckerman, D. M., Resolution exchange simulation with incremental coarsening, J. Chem. Theory Comput., vol. 2, pp. 656-666, 2006.
E. Lyman, Ytreberg, M. F., and Zuckerman, D. M., Resolution exchange simulation, Phys. Rev. Lett., vol. 96, p. 028105, 2006.
E. Lyman, Cui, H., and Voth, G. A., Water under the BAR, Biophys. J., vol. 99, pp. 1783-1790, 2010.